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dc.contributor.authorWang, Qi-
dc.contributor.authorTang, Biao-
dc.contributor.authorSong, Lifu-
dc.contributor.authorRen, Biao-
dc.contributor.authorLiang, Qun-
dc.contributor.authorXie, Feng-
dc.contributor.authorZhuo, Ying-
dc.contributor.authorLiu, Xueting-
dc.contributor.authorZhang, Lixin-
dc.date.accessioned2019-01-31T07:05:55Z-
dc.date.available2019-01-31T07:05:55Z-
dc.date.issued2013-11-14-
dc.identifier.citationBMC Bioinformatics 1 (14): 322 (2013)de_DE
dc.identifier.issn1471-2105de_DE
dc.identifier.urihttps://tubdok.tub.tuhh.de/handle/11420/2003-
dc.description.abstractBackground: The exponential growth of gigantic biological data from various sources, such as protein-protein interaction (PPI), genome sequences scaffolding, Mass spectrometry (MS) molecular networking and metabolic flux, demands an efficient way for better visualization and interpretation beyond the conventional, two-dimensional visualization tools.Results: We developed a 3D Cytoscape Client/Server (3DScapeCS) plugin, which adopted Cytoscape in interpreting different types of data, and UbiGraph for three-dimensional visualization. The extra dimension is useful in accommodating, visualizing, and distinguishing large-scale networks with multiple crossed connections in five case studies.Conclusions: Evaluation on several experimental data using 3DScapeCS and its special features, including multilevel graph layout, time-course data animation, and parallel visualization has proven its usefulness in visualizing complex data and help to make insightful conclusions.en
dc.language.isoende_DE
dc.publisherBioMed Central ; Springerde_DE
dc.relation.ispartofBMC bioinformaticsde_DE
dc.rightsCC BY 2.0de_DE
dc.rightsinfo:eu-repo/semantics/openAccess-
dc.subjectflux balance analysisde_DE
dc.subjectnetwork visualizationde_DE
dc.subjectlayout algorithmde_DE
dc.subjectgraph layoutde_DE
dc.subjectmotion graphde_DE
dc.subject.ddc570: Biowissenschaften, Biologiede_DE
dc.title3DScapeCS : application of three dimensional, parallel, dynamic network visualization in Cytoscapede_DE
dc.typeArticlede_DE
dc.identifier.urnurn:nbn:de:gbv:830-882.026249-
dc.identifier.doi10.15480/882.2000-
dc.type.diniarticle-
dc.subject.ddccode004-
dc.subject.ddccode570-
dcterms.DCMITypeText-
tuhh.identifier.urnurn:nbn:de:gbv:830-882.026249-
tuhh.oai.showtruede_DE
dc.identifier.hdl11420/2003-
tuhh.abstract.englishBackground: The exponential growth of gigantic biological data from various sources, such as protein-protein interaction (PPI), genome sequences scaffolding, Mass spectrometry (MS) molecular networking and metabolic flux, demands an efficient way for better visualization and interpretation beyond the conventional, two-dimensional visualization tools.Results: We developed a 3D Cytoscape Client/Server (3DScapeCS) plugin, which adopted Cytoscape in interpreting different types of data, and UbiGraph for three-dimensional visualization. The extra dimension is useful in accommodating, visualizing, and distinguishing large-scale networks with multiple crossed connections in five case studies.Conclusions: Evaluation on several experimental data using 3DScapeCS and its special features, including multilevel graph layout, time-course data animation, and parallel visualization has proven its usefulness in visualizing complex data and help to make insightful conclusions.de_DE
tuhh.publisher.doi10.1186/1471-2105-14-322-
tuhh.publication.instituteBioprozess- und Biosystemtechnik V-1de_DE
tuhh.identifier.doi10.15480/882.2000-
tuhh.type.opus(wissenschaftlicher) Artikelde
tuhh.institute.germanBioprozess- und Biosystemtechnik V-1de
tuhh.institute.englishBioprozess- und Biosystemtechnik V-1de_DE
tuhh.gvk.hasppnfalse-
openaire.rightsinfo:eu-repo/semantics/openAccessde_DE
dc.type.driverarticle-
dc.rights.ccbyde_DE
dc.rights.ccversion2.0de_DE
dc.type.casraiJournal Articleen
tuhh.container.issue1de_DE
tuhh.container.volume14de_DE
tuhh.container.startpage322de_DE
dc.rights.nationallicensefalsede_DE
item.fulltextWith Fulltext-
item.creatorGNDWang, Qi-
item.creatorGNDTang, Biao-
item.creatorGNDSong, Lifu-
item.creatorGNDRen, Biao-
item.creatorGNDLiang, Qun-
item.creatorGNDXie, Feng-
item.creatorGNDZhuo, Ying-
item.creatorGNDLiu, Xueting-
item.creatorGNDZhang, Lixin-
item.creatorOrcidWang, Qi-
item.creatorOrcidTang, Biao-
item.creatorOrcidSong, Lifu-
item.creatorOrcidRen, Biao-
item.creatorOrcidLiang, Qun-
item.creatorOrcidXie, Feng-
item.creatorOrcidZhuo, Ying-
item.creatorOrcidLiu, Xueting-
item.creatorOrcidZhang, Lixin-
item.grantfulltextopen-
crisitem.author.deptBioprozess- und Biosystemtechnik V-1-
crisitem.author.orcid0000-0003-1092-4568-
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