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3D Zebrafish Tracking Dataset

Citation Link: https://doi.org/10.15480/882.17350
Type
Video
Version
1.0.0
Date Issued
2026-07-02
Author(s)
Neidhardt, Maximilian  
Medizintechnische und Intelligente Systeme E-1  
Bhattacharya, Debayan  
Medizintechnische und Intelligente Systeme E-1  
Contact
Neidhardt, Maximilian  
Medizintechnische und Intelligente Systeme E-1  
Latus, Sarah  orcid-logo
Medizintechnische und Intelligente Systeme E-1  
Data Collector
Universitätsklinikum Hamburg-Eppendorf (UKE)  
Language
English
TORE-DOI
10.15480/882.17350
TORE-URI
https://hdl.handle.net/11420/63594
Abstract
This dataset contains synchronized stereo-camera RGB recordings of zebrafish swimming with varying group sizes (2, 5, 10 fish), along with manually annotated frames for tracking and evaluation. It supports training and benchmarking of deep learning–based multi-object tracking and classification.

The dataset includes raw video data, annotations, model weights, and example predictions. The data processing is described in detail in: Neidhardt, Maximilian, et al. "Robust Motion Tracking and Classification of Zebrafish with Deep Learning." IEEE Access (2026).
Subjects
Deep learning
Fish tracking
Fish trajectory dataset
Locomotion pattern
Physical activity
DDC Class
610: Medicine, Health
006.3: Artificial Intelligence
Funding(s)
Centre of Excellence of Al for Sustainable Living and Working  
GRK 3144: Multiskalen-Analytik und biomedizinische Bildgebung an Grenzflächen für die Skelettfunktion  
I³-Programm  
More Funding Information
This work was partially funded by the TUHH-i3 initiative and the Interdisciplinary Competence Center for Interface Research (ICCIR) supported by Hamburg University of Technology (TUHH) and University Medical Center Hamburg-Eppendorf (UKE), and the RTG 3144 'Multiscale Imaging and Analytics of Interfaces in Musculoskeletal Health' funded by the DFG (Grant 547468385). It received start up funding from the FMTHH (Grant 03fmthh2018).
License
https://creativecommons.org/licenses/by-nc/4.0/
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FishTracking_Data.zip

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67.89 GB

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