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Item type:Publication, Access status: with files , Different alloy, different story? Impact of transfer learning on predictive models for in silico screening of Mg dissolution modulators(Elsevier, 2026-09-26); ; ; ; Ideally, datasets for training machine learning models consist of thousands of versatile data samples — a scale that is seldom met in materials research to date. Transfer learning (TL) is widely used to mitigate data scarcity in available training sets by leveraging knowledge from related domains, since models pretrained on auxiliary datasets may learn structure–property relationships that are transferable from one to another. In this work, the potential of TL for predicting the performance of small organic molecule dissolution modulators is probed using corrosion inhibition responses of eleven Mg-based materials taken from the previously published ExCorr database. A significant improvement in prediction accuracy is observed when transfer learning is applied. However, for the dataset configuration studied here, the apparent cross-alloy TL gains are shown not to arise from transferable structure–activity relationship (SAR) knowledge but rather from a learned alloy-context signal embedded in the data. Seven Mg-based materials—six commercial alloys plus the high-purity variant HPMg51—form a shared-SAR cluster with strongly correlated inhibitor rankings, such that molecules labelled on one material are readily predictable for others within the cluster. Within this shared-SAR cluster, extensive overlap reduces the effective training pool from approximately 900 records to only around 180 unique molecules, placing the task firmly in a small-data regime. In this setting, an in-context large language model (Gemini 3.1 Pro) is the only approach that successfully learns meaningful SAR, with its pretrained knowledge providing the transfer that the explicit source dataset fails to deliver. Seven Mg-based materials in the ExCorr database form a shared-structure–activity relationship (SAR) cluster (pairwise Spearman r=0.67–0.92). Under molecule-disjoint filtering the cross-alloy TL gain on ExCorr splits into a null inhibitor-SAR contribution and a dominant alloy-context contribution. Cross-alloy overlap shrinks ExCorr’s training pool from ≈900records to ≈180unique molecules, only an in-context LLM (Gemini 3.1 Pro) stays predictive.Publicationtype: Journal Article11 12 - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Access status: with files , In-context molecular property prediction with LLMs: a blinding study on memorization and knowledge conflicts(American Chemical Society (ACS), 2026-09-17); ; ; ; The capabilities of large language models (LLMs) have expanded beyond natural language processing to scientific prediction tasks, including molecular property prediction. However, their effectiveness in in-context learning remains ambiguous, particularly given the potential for training data contamination in widely used benchmarks. This paper investigates whether LLMs perform genuine in-context regression on molecular properties or instead rely on verbatim retrieval of memorized target values. Furthermore, we analyze the interplay between pretrained knowledge and in-context information through a series of progressively blinded experiments. We evaluate nine LLM variants across three families (GPT-4.1, GPT-5, Gemini 2.5) on three MoleculeNet data sets (Delaney solubility, Lipophilicity, QM7 atomization energy) using a systematic blinding approach that iteratively reduces available information, complemented by 0-, 60-, and 1000-shot in-context sample sizes as an additional control for information access. To validate the memorization analysis and the blinding experiments, we add a positive and a negative control for the memorization experiments and structural reference baselines for the multishot experiments, as well as bootstrap confidence intervals for all results. We find no evidence of verbatim retrieval on the legacy benchmarks and show that blinding exposes conflicts between pretrained knowledge and in-context information. This work provides a principled framework for evaluating molecular property prediction under controlled information access.Publicationtype: Journal Article7 3 - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Access status: with files , X-ray screening identifies active site and allosteric inhibitors of SARS-CoV-2 main protease(American Association for the Advancement of Science (Assoc.), 2021-04-02); ; ; ; The coronavirus disease (COVID-19) caused by SARS-CoV-2 is creating tremendous human suffering. To date, no effective drug is available to directly treat the disease. In a search for a drug against COVID-19, we have performed a high-throughput X-ray crystallographic screen of two repurposing drug libraries against the SARS-CoV-2 main protease (Mpro), which is essential for viral replication. In contrast to commonly applied X-ray fragment screening experiments with molecules of low complexity, our screen tested alreadyapproved drugs and drugs in clinical trials. From the three-dimensional protein structures, we identified 37 compounds that bind to Mpro. In subsequent cell-based viral reduction assays, one peptidomimetic and six nonpeptidic compounds showed antiviral activity at nontoxic concentrations. We identified two allosteric binding sites representing attractive targets for drug development against SARS-CoV-2.Publicationtype: Journal ArticleScopus© Citations 214 186 281